BioSample: 2018 HUT 023 A

Sequencing data [full table]
Sample type Amplicon target Primers Accession Data analysis
metagenome SRR23363396 krona chart | abundance/taxa | file downloads
Details
Dataset:Binational collaboration to characterize[…] - Chaffin et al. 2021
Sample name: 2018 HUT 023 A
Collection timestamp: 2018-08-09T11:58:00-04:00
Location [GAZ ontology]: Lake Erie
NOAA site:
Sample id: bios_2989
NCBI BioProject:PRJNA932433
NCBI BioSample:SAMN33192205
JGI study:
JGI biosample:
GAZ id: GAZ:00003932
Latitude [decimal degrees]: 41.7026
Longitude [decimal degrees]: -83.21127
ENVO Ontology ID [ENVO ontology]: large freshwater lake biome [ENVO:00000891]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords: HABs
Sample collection depth: 9.15 m
Sediment depth:
Depth at sampling location:
Filter retained pore size:
Pre-filter pore size:
pH: 8.94
Temperature: 24.8 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium: 0.015 mg/L
Dissolved oxygen: 8.11 mg/L
Conductivity: 245.9 μS/cm
Secchi depth: 1.75 m
Turbidity: 4.41 NTU
Particulate microcystin: 1.57 μg/L
Dissolved Microcystin: 0.11 μg/L
Phycocyanin:
Microcystin: 1.68 μg/L
Anatoxin:
Chlorophyll: 9.3 μg/L
Total phosphorus: 17.004726 μg/L
Total dissolved phosphorus:
Soluble reactive phosphorus: 3.229 μg/L
Ammonia:
Nitrate and nitrite: 1.197 mg/L
Nitrate: 1.169 mg/L
Nitrite: 27.834 μg/L
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter:
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence: 0.82 rel AU
Sample collection device:
Modified or experimental: False
Is isolate: False
Negative control [TRUE / FALSE]: False
Mock community [TRUE / FALSE]: False
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate: 55.627 μmol/L
Total nitrogen: 45.558 μmol/L
Green algae: 0.54 µg/L
Bluegreen algae: 2.03 µg/L
Diatoms: 1.16 µg/L
Cryptophyta: 2.06 µg/L
Total microcystin: 0.11 μg/L
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence:
Salinity measured using a sonde [parts per thousand]:
Atmospheric temperature:
Particulate cylindrospermopsin:
Redox potential-ORP [millivolts]:
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: