BioSample: SAMN11641978

Sequencing data [full table]
Sample type Amplicon target Primers Accession Data analysis
amplicon 515F / 926R SRR9053727
Details
Dataset:Harbor water shotgun metagenomes from[…] - Ghannam et al. 2020
Sample name:
Collection timestamp: 2016-10-27T12:18:55-04:00
Location [GAZ ontology]: Lake Superior
NOAA site:
Sample id: bios_9914
NCBI BioProject:PRJNA542890
NCBI BioSample:SAMN11641978
JGI study:
JGI biosample:
GAZ id: GAZ:00003864
Latitude [decimal degrees]: 46.761173
Longitude [decimal degrees]: -92.093498
ENVO Ontology ID [ENVO ontology]: Large Freshwater Lake Biome [ENVO:00000891]
Env local scale: Lake [ENVO:00000020]
Sample material [ENVO ontology]: water [ENVO:00002006]
Keywords:
Sample collection depth: 0.028 m
Sediment depth:
Depth at sampling location:
Filter retained pore size: 1.6 μm
Pre-filter pore size: 0.2 μm
pH: 7.59
Temperature: 9.89 °C
Calcium:
Potassium:
Phosphate:
Magnesium:
Ammonium:
Dissolved oxygen: 10.32 mg/L
Conductivity: 141.5 μS/cm
Secchi depth:
Turbidity:
Particulate microcystin:
Dissolved Microcystin:
Phycocyanin:
Microcystin:
Anatoxin:
Chlorophyll:
Total phosphorus:
Total dissolved phosphorus:
Soluble reactive phosphorus:
Ammonia:
Nitrate and nitrite:
Nitrate:
Nitrite:
Urea:
Particulate organic carbon:
Particulate organic nitrogen:
Dissolved organic carbon:
DOM absorbance at 400 nm:
Hydrogen peroxide:
Suspended particulate matter: 129 mg/L
Suspended volitile solids:
Microcystis cell count:
Planktothrix cell count:
Anabaena cell count:
Cylidrospermopsis cell count:
Ice cover:
Chlorophyll a fluorescence:
Sample collection device:
Modified or experimental: False
Is isolate:
Negative control [TRUE / FALSE]:
Mock community [TRUE / FALSE]:
Volume filtered:
Filtration duration [hh:mm:ss]:
qPCR; Phytoxigene total cyanobacteria:
qPCR; Phytoxigene mcyE:
qPCR; Phytoxigene sxtA:
Silicate:
Total nitrogen:
Green algae:
Bluegreen algae:
Diatoms:
Cryptophyta:
Total microcystin:
Attenuation:
Transmission:
Photosynthetically active radiation:
Sky:
Wave height:
Wind speed:
Phycocyanin fluoresence:
Salinity measured using a sonde [parts per thousand]: 0.09 ppt
Atmospheric temperature:
Particulate cylindrospermopsin:
Redox potential-ORP [millivolts]: 222.6 mV
Replicate ID:
AlgaeTorch Cyanobacterial abundance:
AlgaeTorch total:
Environment Canada Sampling site:
Environment Kenya Sampling site:
Amended site name:
Station description about location: